PhageRage

Viral metagenomic studies have uncovered a wealth of novel genes and genomes, increasing our relatively limited knowledge of viral sequence diversity. A new software pipeline called PhageRage has been developed for the comprehensive examination of viral metagenomic data including raw sequence read quality control, assembly, annotation, and tools for analysis and interpretation. PhageRage integrates existing tools coupled with new reporting and visualization functionality and is specifically aimed at providing comprehensive analyses feasibly (both with respect to time and memory usage).

PhageRage is available as a Docker Image at https://github.com/thatzopoulos/phage-rage